Index

A

accept_shape() (in module zea.data.convert.echonet) add_rectangle_from_mask() (in module zea.tools.selection_tool) add_salt_and_pepper_noise() (in module zea.tensor_ops) add_shape_from_mask() (in module zea.tools.selection_tool) AnisotropicDiffusion (class in zea.ops) antirect() (in module zea.backend.tensorflow.layers.utils) append() (zea.ops.Pipeline method) append_to_yaml() (zea.utils.FunctionTimer method) apply() (zea.agent.selection.MaskActionModel method) apply_along_axis() (in module zea.tensor_ops)

apply_delays() (in module zea.beamform.beamformer) as_dict() (zea.config.Config method) ask_for_num_selections() (in module zea.tools.selection_tool) ask_for_selection_tool() (in module zea.tools.selection_tool) ask_for_title() (in module zea.tools.selection_tool) ask_save_animation_with_fps() (in module zea.tools.selection_tool) assert_key() (in module zea.data.file) attenuate() (in module zea.simulator) AutoGrad (class in zea.backend.autograd) azimuth_angles (zea.scan.Scan property)

B

backend (zea.backend.autograd.AutoGrad property) BaseModel (class in zea.models.base) batch_cov() (in module zea.tensor_ops) batched_map() (in module zea.tensor_ops) blue() (in module zea.log) bold() (in module zea.log)

boolean_mask() (in module zea.tensor_ops) BranchedPipeline (class in zea.ops) build() (zea.backend.tensorflow.models.lista.Prox method) (zea.data.augmentations.RandomCircleInclusion method) (zea.models.echonet.EchoNetDynamic method) (zea.models.taesd.TinyBase method) builtin_presets() (in module zea.models.preset_utils)

C

calculate_delays() (in module zea.beamform.beamformer) calculate_file_hash() (in module zea.utils) calculate_lens_corrected_delays() (in module zea.beamform.lens_correction) call() (zea.backend.tensorflow.losses.SMSLE method) (zea.backend.tensorflow.models.lista.Prox method) (zea.data.augmentations.RandomCircleInclusion method) (zea.data.layers.Pad method) (zea.data.layers.Resizer method) (zea.models.carotid_segmenter.CarotidSegmenter method) (zea.models.dense.DenseNet method) (zea.models.dense.DenseTimeConditionalNet method) (zea.models.diffusion.DiffusionModel method) (zea.models.echonet.EchoNetDynamic method) (zea.models.lpips.LPIPS method) (zea.models.taesd.TinyAutoencoder method) (zea.models.taesd.TinyBase method) (zea.models.unet.UNet method) (zea.models.unet.UNetTimeConditional method) (zea.ops.AnisotropicDiffusion method) (zea.ops.BranchedPipeline method) (zea.ops.ChannelsToComplex method) (zea.ops.Clip method) (zea.ops.Companding method) (zea.ops.ComplexToChannels method) (zea.ops.DelayAndSum method) (zea.ops.Demodulate method) (zea.ops.Downsample method) (zea.ops.EnvelopeDetect method) (zea.ops.GaussianBlur method) (zea.ops.Identity method) (zea.ops.Lambda method) (zea.ops.LeeFilter method) (zea.ops.LogCompress method) (zea.ops.Mean method) (zea.ops.Merge method) (zea.ops.Normalize method) (zea.ops.Operation method) (zea.ops.Pad method) (zea.ops.PatchedGrid method) (zea.ops.PfieldWeighting method) (zea.ops.Pipeline method) (zea.ops.ScanConvert method) (zea.ops.Simulate method) (zea.ops.Split method) (zea.ops.Stack method) (zea.ops.Sum method) (zea.ops.Threshold method) (zea.ops.TOFCorrection method) (zea.ops.Transpose method) (zea.ops.UpMix method) call_item() (zea.ops.PatchedGrid method) CarotidSegmenter (class in zea.models.carotid_segmenter) cart2pol() (in module zea.display) cartesian_pixel_grid() (in module zea.beamform.pixelgrid) cartesian_to_polar_matrix() (in module zea.data.convert.echonet) (in module zea.display) channels_to_complex() (in module zea.ops) ChannelsToComplex (class in zea.ops) check_architecture() (in module zea.utils)

check_config() (in module zea.config) check_config_class() (in module zea.models.preset_utils) check_data() (zea.data.file.File static method) check_file_exists() (in module zea.models.preset_utils) check_for_aliasing() (in module zea.beamform.pixelgrid) check_for_display() (zea.interface.Interface method) check_model_class() (zea.models.preset_utils.KerasPresetLoader method) check_patches_fit() (in module zea.tensor_ops) choose_file_path() (zea.interface.Interface method) clear() (zea.config.Config method) clear_cache() (zea.ops.Operation method) Clip (class in zea.ops) close() (zea.data.datasets.Dataset method) cnr() (in module zea.metrics) color_doppler() (in module zea.doppler) Companding (class in zea.ops) complex_to_channels() (in module zea.ops) ComplexToChannels (class in zea.ops) compute_error() (zea.models.diffusion.DPS method) compute_lens_corrected_travel_times() (in module zea.beamform.lens_correction) compute_output_shape() (zea.backend.tensorflow.models.lista.Prox method) (zea.data.augmentations.RandomCircleInclusion method) compute_pairwise_pixel_gaussian_error() (zea.agent.selection.GreedyEntropy static method) compute_pixelwise_entropy() (zea.agent.selection.GreedyEntropy method) compute_required_patch_overlap() (in module zea.tensor_ops) compute_required_patch_shape() (in module zea.tensor_ops) compute_scan_convert_2d_coordinates() (in module zea.display) compute_scan_convert_3d_coordinates() (in module zea.display) compute_t0_delays_focused() (in module zea.beamform.delays) compute_t0_delays_planewave() (in module zea.beamform.delays) compute_travel_time() (in module zea.beamform.lens_correction) compute_xl() (in module zea.beamform.lens_correction) Config (class in zea.config) configure_console_logger() (in module zea.log) configure_file_logger() (in module zea.log) contrast() (in module zea.metrics) convert_camus() (in module zea.data.convert.camus) convert_image_dataset() (in module zea.data.convert.images) convert_picmus() (in module zea.data.convert.picmus) coordinates (zea.scan.Scan property) coordinates_2d (zea.scan.Scan property) coordinates_3d (zea.scan.Scan property) copy() (zea.config.Config method) (zea.data.datasets.Folder method) (zea.ops.Pipeline method) copy_key() (zea.data.file.File method) correlate() (in module zea.tensor_ops) count_samples_per_directory() (in module zea.data.datasets) CovarianceSamplingLines (class in zea.agent.selection) create_new_user() (in module zea.datapaths) create_probe_geometry() (in module zea.probes) critical() (in module zea.log) crop_and_center_cone() (in module zea.tools.fit_scan_cone) crop_array() (in module zea.tools.selection_tool) custom_load_weights() (zea.models.echonet.EchoNetDynamic method) (zea.models.lpips.LPIPS method) (zea.models.taesd.TinyAutoencoder method) (zea.models.taesd.TinyBase method) CustomFormatter (class in zea.log) cyan() (in module zea.log)

D

darkgreen() (in module zea.log) data (zea.data.data_format.DatasetElement attribute) data_root (zea.interface.Interface property) data_to_display() (zea.interface.Interface method) Dataset (class in zea.data.datasets) dataset_folder (zea.interface.Interface property) dataset_name (zea.data.data_format.DatasetElement attribute) DatasetElement (class in zea.data.data_format) date_string_to_readable() (in module zea.utils) debug() (in module zea.log) decode() (zea.models.taesd.TinyAutoencoder method) decode_file_info() (in module zea.data.utils) decode_string() (in module zea.data.convert.matlab) deep_compare() (in module zea.utils) DeepGenerativeModel (class in zea.models.generative) default() (zea.data.utils.ZeaJSONEncoder method) delay2() (in module zea.simulator) DelayAndSum (class in zea.ops) Demodulate (class in zea.ops) demodulate() (in module zea.ops) demodulate_not_jitable() (in module zea.ops) demodulation_frequency (zea.scan.Scan property)

denoise() (zea.models.diffusion.DiffusionModel method) DenseNet (class in zea.models.dense) DenseTimeConditionalNet (class in zea.models.dense) deprecated() (in module zea.log) (in module zea.utils) dereference_index() (in module zea.data.convert.matlab) description (zea.data.data_format.DatasetElement attribute) (zea.data.file.File property) deserialize_zea_object() (in module zea.models.base) detect_cone_parameters() (in module zea.tools.fit_scan_cone) diffusion_schedule() (zea.models.diffusion.DiffusionModel method) DiffusionGuidance (class in zea.models.diffusion) DiffusionModel (class in zea.models.diffusion) directivity() (in module zea.simulator) distance_Rx() (in module zea.beamform.beamformer) distance_Tx_generic() (in module zea.beamform.beamformer) DotDict (class in zea.backend.tensorflow.utils.utils) DownBlock() (in module zea.models.layers) Downsample (class in zea.ops) DPS (class in zea.models.diffusion) dtype (zea.interface.Interface property) dxl() (in module zea.beamform.lens_correction)

E

EchoNetDynamic (class in zea.models.echonet) element_width (zea.scan.Scan property) enable_file_logging() (in module zea.log) encode() (zea.models.taesd.TinyAutoencoder method) EnvelopeDetect (class in zea.ops) equalize_polygons() (in module zea.tools.selection_tool) EquispacedLines (class in zea.agent.selection) error() (in module zea.log)

Esaote_sll1543 (class in zea.probes) evaluate_recovered_circle_accuracy() (zea.data.augmentations.RandomCircleInclusion method) event_keys (zea.data.file.File property) events_have_same_shape() (zea.data.file.File method) export_to_yaml() (zea.utils.FunctionTimer method) extend_n_dims() (in module zea.tensor_ops) extent (zea.scan.Scan property) extract_polygon_from_mask() (in module zea.tools.selection_tool) extract_rectangle_from_mask() (in module zea.tools.selection_tool)

F

File (class in zea.data.file) file_path (zea.interface.Interface property) filter_edge_points_by_boundary() (in module zea.tools.fit_scan_cone) find_files_and_shapes() (zea.data.datasets.Dataset method) find_first_nonzero_index() (in module zea.utils) find_h5_files() (in module zea.data.datasets) find_key() (in module zea.utils) find_methods_with_return_type() (in module zea.utils) find_split_for_file() (in module zea.data.convert.echonet) first_not_none_item() (in module zea.utils) fish() (in module zea.beamform.phantoms) fit() (zea.models.generative.GenerativeModel method) (zea.models.gmm.GaussianMixtureModel method) fit_and_crop_around_scan_cone() (in module zea.tools.fit_scan_cone) flat_pfield (zea.scan.Scan property) flatgrid (zea.scan.Scan property) flatten() (in module zea.tensor_ops) flatten_outputs() (zea.ops.BranchedPipeline method) fn_requires_argument() (in module zea.utils) fnum_window_fn_hann() (in module zea.beamform.beamformer) fnum_window_fn_rect() (in module zea.beamform.beamformer) fnum_window_fn_tukey() (in module zea.beamform.beamformer) fnumber_mask() (in module zea.beamform.beamformer) focus_distances (zea.scan.Scan property) Folder (class in zea.data.datasets) fori_loop() (in module zea.tensor_ops)

format() (zea.log.CustomFormatter method) format_data_path() (in module zea.datapaths) format_key() (zea.data.file.File method) forward() (zea.backend.torch.losses.SMSLE method) frame_no (zea.interface.Interface property) frames_per_second (zea.scan.Scan property) freeze() (zea.config.Config method) from_config() (zea.data.datasets.Dataset class method) (zea.models.base.BaseModel class method) (zea.ops.Pipeline class method) from_default() (zea.ops.Pipeline class method) from_hf() (zea.config.Config class method) from_json() (zea.ops.Pipeline class method) from_name() (zea.probes.Probe class method) from_parameters() (zea.probes.Probe class method) from_path() (zea.config.Config class method) from_preset() (zea.models.base.BaseModel class method) from_yaml() (zea.config.Config class method) (zea.ops.Pipeline class method) fromkeys() (zea.config.Config method) frustum_convert_rt2xz() (in module zea.display) frustum_convert_rtp2xyz() (in module zea.display) frustum_convert_xyz2rtp() (in module zea.display) frustum_convert_xz2rt() (in module zea.display) func_with_one_batch_dim() (in module zea.tensor_ops) FunctionTimer (class in zea.utils) fwhm() (in module zea.metrics)

G

gaussian_filter() (in module zea.tensor_ops) gaussian_filter1d() (in module zea.tensor_ops) GaussianBlur (class in zea.ops) GaussianMixtureModel (class in zea.models.gmm) gcnr() (in module zea.metrics) generate_example_dataset() (in module zea.data.data_format) generate_h5_indices() (in module zea.data.dataloader) generate_zea_dataset() (in module zea.data.data_format) GenerativeModel (class in zea.models.generative) get() (zea.config.Config method) get_activation() (in module zea.backend.tensorflow.layers.utils) get_answer() (in module zea.data.convert.matlab) get_args() (in module zea.data.convert.camus) (in module zea.data.convert.echonet) (in module zea.data.convert.picmus) (in module zea.tools.fit_scan_cone) get_band_pass_filter() (in module zea.ops) get_config() (zea.data.augmentations.RandomCircleInclusion method) (zea.models.carotid_segmenter.CarotidSegmenter method) (zea.models.dense.DenseNet method) (zea.models.dense.DenseTimeConditionalNet method) (zea.models.diffusion.DiffusionModel method) (zea.models.unet.UNet method) (zea.models.unet.UNetTimeConditional method) (zea.ops.BranchedPipeline method) get_data() (zea.interface.Interface method) get_data_types() (zea.data.datasets.Folder static method) get_date_string() (in module zea.utils) get_dense_network() (in module zea.models.dense) get_dict() (zea.ops.BranchedPipeline method) (zea.ops.Operation method) (zea.ops.PatchedGrid method) (zea.ops.Pipeline method) get_event_shapes() (zea.data.file.File method) get_file() (in module zea.models.preset_utils) (zea.data.datasets.H5FileHandleCache method) (zea.models.preset_utils.KerasPresetLoader method)

get_format_fn() (in module zea.log) get_frame_indices() (in module zea.data.convert.matlab) get_function_args() (in module zea.utils) get_gradient_and_value_jit_fn() (zea.backend.autograd.AutoGrad method) get_gradient_jit_fn() (zea.backend.autograd.AutoGrad method) get_kernel() (zea.ops.GaussianBlur method) get_low_pass_iq_filter() (in module zea.ops) get_metric() (in module zea.metrics) get_model_kwargs() (zea.models.preset_utils.PresetLoader method) get_ops() (in module zea.ops) get_parameters() (zea.data.file.File method) (zea.probes.Esaote_sll1543 method) (zea.probes.Probe method) get_params() (zea.ops.Pipeline method) get_preset_loader() (in module zea.models.preset_utils) get_preset_saver() (in module zea.models.preset_utils) get_probe_parameters() (zea.data.file.File method) get_pulse_spectrum_fn() (in module zea.simulator) get_reference_size() (in module zea.data.convert.matlab) get_scan_parameters() (zea.data.file.File method) get_shape() (zea.data.file.File class method) get_split() (in module zea.data.convert.camus) (zea.data.convert.echonet.H5Processor method) get_stats() (zea.utils.FunctionTimer method) get_time_conditional_dense_network() (in module zea.models.dense) get_time_conditional_unetwork() (in module zea.models.unet) get_transducer_bandwidth_fn() (in module zea.simulator) get_unetwork() (in module zea.models.unet) gradient() (zea.backend.autograd.AutoGrad method) gradient_and_value() (zea.backend.autograd.AutoGrad method) grayscale_to_rgb() (in module zea.utils) GreedyEntropy (class in zea.agent.selection) green() (in module zea.log) grid (zea.scan.Scan property) grid_size_x (zea.scan.Scan property) grid_size_z (zea.scan.Scan property) group_name (zea.data.data_format.DatasetElement attribute) gumbel_sample() (zea.agent.gumbel.SubsetOperator method)

H

H5FileHandleCache (class in zea.data.datasets) H5Generator (class in zea.data.dataloader) H5GeneratorTF (class in zea.backend.tensorflow.dataloader) H5Processor (class in zea.data.convert.echonet) hann_fd() (in module zea.simulator)

hann_unnormalized() (in module zea.simulator) hard_straight_through() (in module zea.agent.gumbel) has_events (zea.data.file.File property) HFPath (class in zea.tools.hf) hilbert() (in module zea.ops)

I

Identity (class in zea.ops) image_entropy() (in module zea.metrics) image_sharpness() (in module zea.metrics) images_to_patches() (in module zea.tensor_ops) indices_to_k_hot() (in module zea.agent.masks) info() (in module zea.log) initial_equispaced_lines() (in module zea.agent.masks) initial_sample_stateless() (zea.agent.selection.EquispacedLines method) initial_times (zea.scan.Scan property) input_data_type (zea.ops.Pipeline property) insert() (zea.ops.Pipeline method) interactive_selector() (in module zea.tools.selection_tool) interactive_selector_for_dataset() (in module zea.tools.selection_tool)

interactive_selector_with_plot_and_metric() (in module zea.tools.selection_tool) Interface (class in zea.interface) interpolate_data() (in module zea.tensor_ops) interpolate_masks() (in module zea.tools.selection_tool) interpolate_polygons() (in module zea.tools.selection_tool) interpolate_rectangles() (in module zea.tools.selection_tool) inverse_scan_convert_2d() (in module zea.display) is_dir() (zea.tools.hf.HFPath method) is_file() (zea.tools.hf.HFPath method) is_jax_prng_key() (in module zea.tensor_ops) is_monotonic() (in module zea.tensor_ops) items() (zea.config.Config method) iterator() (zea.data.dataloader.H5Generator method)

J

jax_memory_cleanup() (in module zea.models.preset_utils) jit() (in module zea.backend) (zea.ops.PatchedGrid method) (zea.ops.Pipeline method) jit_options (zea.ops.PatchedGrid property) (zea.ops.Pipeline property)

jittable (zea.ops.Operation property) (zea.ops.Pipeline property) jittable_call() (zea.ops.PatchedGrid method) joinpath() (zea.tools.hf.HFPath method) json_dumps() (in module zea.data.utils) json_loads() (in module zea.data.utils)

K

k_hot_to_indices() (in module zea.agent.masks) keep_trying() (in module zea.utils) keras_to_zea_registry() (in module zea.models.preset_utils) KerasPresetLoader (class in zea.models.preset_utils)

KerasPresetSaver (class in zea.models.preset_utils) key (zea.ops.Pipeline property) key_to_data_type() (zea.data.file.File static method) keys() (zea.config.Config method)

L

l1loss() (in module zea.metrics) L2() (in module zea.tensor_ops) l2loss() (in module zea.metrics) Lambda (class in zea.ops) LeeFilter (class in zea.ops) linear_diffusion_schedule() (zea.models.diffusion.DiffusionModel method) linear_model() (in module zea.models.lpips) linear_sum_assignment() (in module zea.tensor_ops) lines_to_im_size() (in module zea.agent.masks) (zea.agent.selection.LinesActionModel method) LinesActionModel (class in zea.agent.selection) load() (zea.data.dataloader.H5Generator method) (zea.ops.Pipeline class method) load_data() (zea.data.file.File method) load_file() (in module zea.data.file) load_image() (in module zea.io_lib)

load_image_converter() (zea.models.preset_utils.KerasPresetLoader method) load_json() (in module zea.models.preset_utils) load_model() (zea.models.preset_utils.KerasPresetLoader method) (zea.models.preset_utils.PresetLoader method) load_model_from_hf() (in module zea.tools.hf) load_preprocessor() (zea.models.preset_utils.KerasPresetLoader method) (zea.models.preset_utils.PresetLoader method) load_scan() (zea.data.file.File method) load_serialized_object() (in module zea.models.preset_utils) load_transmits() (zea.data.file.File method) load_video() (in module zea.io_lib) log_density() (zea.models.generative.GenerativeModel method) (zea.models.gmm.GaussianMixtureModel method) log_likelihood() (zea.models.diffusion.DiffusionModel method) LogCompress (class in zea.ops) LossTrackerWrapper (class in zea.models.utils) LPIPS (class in zea.models.lpips)

M

magenta() (in module zea.log) main() (in module zea.tools.fit_scan_cone) (in module zea.tools.selection_tool) make_dataloader() (in module zea.backend.tensorflow.dataloader) make_line_mask() (in module zea.agent.masks) make_operation_chain() (in module zea.ops) map_coordinates() (in module zea.display) map_indices_for_interpolation() (in module zea.tensor_ops) map_negative_indices() (in module zea.utils) MaskActionModel (class in zea.agent.selection) match_means_covariances() (in module zea.models.gmm) match_polygons() (in module zea.tools.selection_tool) matplotlib_figure_to_numpy() (in module zea.io_lib) matrix_power() (in module zea.tensor_ops) maybe_convert_to_jax() (zea.models.echonet.EchoNetDynamic method) (zea.models.taesd.TinyBase method) Mean (class in zea.ops) Merge (class in zea.ops) metrics (zea.models.diffusion.DiffusionModel property) model_directory_from_wandb() (in module zea.tools.wndb) module zea zea.agent zea.agent.gumbel zea.agent.masks zea.agent.selection zea.backend zea.backend.autograd zea.backend.jax zea.backend.tensorflow zea.backend.tensorflow.dataloader zea.backend.tensorflow.layers zea.backend.tensorflow.layers.apodization zea.backend.tensorflow.layers.utils zea.backend.tensorflow.losses zea.backend.tensorflow.models zea.backend.tensorflow.models.lista zea.backend.tensorflow.utils zea.backend.tensorflow.utils.callbacks zea.backend.tensorflow.utils.utils zea.backend.torch zea.backend.torch.losses zea.beamform zea.beamform.beamformer zea.beamform.delays zea.beamform.lens_correction zea.beamform.pfield zea.beamform.phantoms zea.beamform.pixelgrid zea.config zea.data zea.data.augmentations zea.data.convert zea.data.convert.camus zea.data.convert.echonet zea.data.convert.images zea.data.convert.matlab zea.data.convert.picmus zea.data.data_format zea.data.dataloader zea.data.datasets zea.data.file zea.data.layers zea.data.preset_utils zea.data.utils zea.datapaths zea.display zea.doppler zea.interface zea.io_lib zea.log zea.metrics zea.models zea.models.base zea.models.carotid_segmenter zea.models.dense zea.models.diffusion zea.models.echonet zea.models.generative zea.models.gmm zea.models.layers zea.models.lpips zea.models.preset_utils zea.models.presets zea.models.taesd zea.models.unet zea.models.utils zea.ops zea.probes zea.scan zea.simulator zea.tensor_ops zea.tools zea.tools.fit_scan_cone zea.tools.hf zea.tools.selection_tool zea.tools.wndb zea.utils zea.visualize

N

n_files (zea.data.datasets.Dataset property) (zea.data.datasets.Folder property) n_frames (zea.data.file.File property) n_tx (zea.scan.Scan property) n_tx_total (zea.scan.Scan property) name (zea.data.file.File property) ncc() (in module zea.metrics)

needs() (zea.ops.Pipeline method) next_equispaced_lines() (in module zea.agent.masks) nonzero() (in module zea.tensor_ops) Normalize (class in zea.ops) normalize_pressure_field() (in module zea.beamform.pfield) NoYamlFileError number_to_str() (in module zea.log)

O

on_device_jax() (in module zea.backend.jax) on_device_tf() (in module zea.backend.tensorflow) on_device_torch() (in module zea.backend.torch) Operation (class in zea.ops)

operations (zea.ops.Pipeline property) orange() (in module zea.log) output_data_type (zea.ops.Pipeline property) output_key (zea.ops.Pipeline property) output_signature (zea.backend.tensorflow.dataloader.H5GeneratorTF property)

P

Pad (class in zea.data.layers) (class in zea.ops) pad() (zea.ops.Pad method) pad_array_to_divisible() (in module zea.tensor_ops) pad_or_crop_extent() (in module zea.visualize) parse_args() (in module zea.data.convert.matlab) patched_map() (in module zea.tensor_ops) PatchedGrid (class in zea.ops) patches_to_images() (in module zea.tensor_ops) path (zea.data.file.File property) perceptual_model() (in module zea.models.lpips) pfield (zea.scan.Scan property) PfieldWeighting (class in zea.ops) Pipeline (class in zea.ops) pipeline_from_config() (in module zea.ops) pipeline_from_json() (in module zea.ops) pipeline_from_yaml() (in module zea.ops) pipeline_to_config() (in module zea.ops) pipeline_to_json() (in module zea.ops) pipeline_to_yaml() (in module zea.ops) planewave_focal_distance_to_inf() (in module zea.data.convert.matlab) plot() (zea.interface.Interface method) plot_biplanes() (in module zea.visualize) plot_frustum_vertices() (in module zea.visualize) plot_image_grid() (in module zea.visualize) plot_quadrants() (in module zea.visualize)

plot_t0_delays() (in module zea.beamform.delays) polar_angles (zea.scan.Scan property) polar_limits (zea.scan.Scan property) polar_pixel_grid() (in module zea.beamform.pixelgrid) pop() (zea.config.Config method) popitem() (zea.config.Config method) posterior_sample() (zea.models.diffusion.DiffusionModel method) (zea.models.generative.GenerativeModel method) (zea.models.gmm.GaussianMixtureModel method) prepare_diffusion() (zea.models.diffusion.DiffusionModel method) prepare_parameters() (zea.ops.Pipeline method) prepare_schedule() (zea.models.diffusion.DiffusionModel method) prepend() (zea.ops.Pipeline method) preprocess_for_saving() (in module zea.utils) preprocess_input() (zea.models.lpips.LPIPS static method) PresetLoader (class in zea.models.preset_utils) presets (zea.models.base.BaseModel attribute) print() (zea.utils.FunctionTimer method) print_clear_line() (in module zea.utils) Probe (class in zea.probes) probe() (zea.data.file.File method) probe_name (zea.data.file.File property) process_image() (zea.ops.DelayAndSum method) Prox (class in zea.backend.tensorflow.models.lista) psnr() (in module zea.metrics) purple() (in module zea.log)

R

radial_pixel_grid() (in module zea.beamform.pixelgrid) random_uniform_lines() (in module zea.agent.masks) (zea.agent.selection.CovarianceSamplingLines method) RandomCircleInclusion (class in zea.data.augmentations) read_azimuth_angles() (in module zea.data.convert.matlab) read_bandwidth_percent() (in module zea.data.convert.matlab) read_focus_distances() (in module zea.data.convert.matlab) read_image_data_p() (in module zea.data.convert.matlab) read_initial_times() (in module zea.data.convert.matlab) read_lens_correction() (in module zea.data.convert.matlab) read_polar_angles() (in module zea.data.convert.matlab) read_probe_center_frequency() (in module zea.data.convert.matlab) read_probe_element_width() (in module zea.data.convert.matlab) read_probe_geometry() (in module zea.data.convert.matlab) read_probe_name() (in module zea.data.convert.matlab) read_raw_data() (in module zea.data.convert.matlab) read_sampling_frequency() (in module zea.data.convert.matlab) read_sound_speed() (in module zea.data.convert.matlab) read_t0_delays_apod() (in module zea.data.convert.matlab) read_tgc_gain_curve() (in module zea.data.convert.matlab) read_transmit_events() (in module zea.data.convert.matlab) read_verasonics_file() (in module zea.data.convert.matlab) read_waveforms() (in module zea.data.convert.matlab) read_wavelength() (in module zea.data.convert.matlab)

reconstruct_mask_from_polygon() (in module zea.tools.selection_tool) reconstruct_mask_from_rectangle() (in module zea.tools.selection_tool) recursively_load_dict_contents_from_group() (in module zea.data.file) (zea.data.file.File method) red() (in module zea.log) reduce_to_signature() (in module zea.utils) register_presets() (in module zea.models.preset_utils) remove_color_escape_codes() (in module zea.log) remove_masks_from_axs() (in module zea.tools.selection_tool) repo_id (zea.tools.hf.HFPath property) resample() (in module zea.tensor_ops) reset_state() (zea.models.utils.LossTrackerWrapper method) reshape_axis() (in module zea.tensor_ops) ResidualBlock() (in module zea.models.layers) Resizer (class in zea.data.layers) result() (zea.models.utils.LossTrackerWrapper method) retry_on_io_error() (in module zea.io_lib) reverse_conditional_diffusion() (zea.models.diffusion.DiffusionModel method) reverse_diffusion() (zea.models.diffusion.DiffusionModel method) reverse_diffusion_step() (zea.models.diffusion.DiffusionModel method) rho_range (zea.scan.Scan property) rotate_coordinates() (in module zea.data.convert.echonet) (in module zea.display) run() (zea.interface.Interface method) run_movie() (zea.interface.Interface method)

S

safe_initialize_class() (in module zea.utils) safe_vectorize() (in module zea.tensor_ops) sample() (zea.agent.selection.CovarianceSamplingLines method) (zea.agent.selection.EquispacedLines method) (zea.agent.selection.GreedyEntropy method) (zea.agent.selection.UniformRandomLines method) (zea.models.diffusion.DiffusionModel method) (zea.models.generative.GenerativeModel method) (zea.models.gmm.GaussianMixtureModel method) sample_stateless() (zea.agent.selection.EquispacedLines method) save_image() (zea.interface.Interface method) save_image_converter() (zea.models.preset_utils.KerasPresetSaver method) save_model() (zea.models.preset_utils.KerasPresetSaver method) save_preprocessor() (zea.models.preset_utils.KerasPresetSaver method) save_to_gif() (in module zea.utils) save_to_mp4() (in module zea.utils) save_to_preset() (zea.models.base.BaseModel method) save_to_yaml() (zea.config.Config method) save_video() (zea.interface.Interface method) Scan (class in zea.scan) scan() (zea.data.file.File method) scan_convert() (in module zea.display) scan_convert_2d() (in module zea.display) scan_convert_3d() (in module zea.display) ScanConvert (class in zea.ops) search_file_tree() (in module zea.io_lib) segment() (in module zea.data.convert.echonet) select_line_and_reweight_entropy() (zea.agent.selection.GreedyEntropy method) selected_transmits (zea.scan.Scan property) serialize() (zea.config.Config method) set_backend_for_notebooks() (zea.interface.Interface method) set_data_paths() (in module zea.datapaths) set_dtype_in_config() (in module zea.models.preset_utils) set_file_logger_directory() (in module zea.log) set_function() (zea.backend.autograd.AutoGrad method) set_input_cache() (zea.ops.Operation method) set_jit() (zea.ops.Operation method) set_level() (in module zea.log) set_mpl_style() (in module zea.visualize) set_output_cache() (zea.ops.Operation method)

set_params() (zea.ops.Pipeline method) set_transmits() (zea.scan.Scan method) setdefault() (zea.config.Config method) setup() (zea.models.diffusion.DiffusionGuidance method) (zea.models.diffusion.DPS method) shape() (zea.data.file.File method) Simulate (class in zea.ops) simulate_rf() (in module zea.simulator) sinc() (in module zea.simulator) (in module zea.tensor_ops) sinusoidal_embedding() (in module zea.models.layers) sitk_load() (in module zea.data.convert.camus) SMSLE (class in zea.backend.tensorflow.losses) (class in zea.backend.torch.losses) snr() (in module zea.metrics) speckle_res() (in module zea.metrics) Split (class in zea.ops) split_files_by_directory() (in module zea.data.datasets) split_seed() (in module zea.tensor_ops) split_volume_data_from_axis() (in module zea.tensor_ops) spread() (in module zea.simulator) square_wave_apodization() (in module zea.backend.tensorflow.layers.apodization) Stack (class in zea.ops) stack_volume_data_along_axis() (in module zea.tensor_ops) start_track_progress() (zea.models.diffusion.DiffusionModel method) static_params (zea.ops.Operation property) (zea.ops.Pipeline property) STATIC_PARAMS (zea.ops.ScanConvert attribute) (zea.ops.Simulate attribute) (zea.ops.TOFCorrection attribute) stem (zea.data.file.File property) store_progress() (zea.models.diffusion.DiffusionModel method) strtobool() (in module zea.utils) subpath (zea.tools.hf.HFPath property) SubsetOperator (class in zea.agent.gumbel) success() (in module zea.log) suffix_merge_outputs() (zea.ops.BranchedPipeline method) Sum (class in zea.ops) summary() (zea.data.dataloader.H5Generator method) (zea.data.file.File method)

T

t0_delays (zea.scan.Scan property) tensorflow_dtype (zea.backend.tensorflow.dataloader.H5GeneratorTF property) tf_complex_resize() (in module zea.backend.tensorflow.layers.utils) tf_cropping_and_padding() (in module zea.backend.tensorflow.layers.utils) tf_function() (in module zea.backend) tf_snapshot() (in module zea.backend.tensorflow.utils.utils) tf_unwrap() (in module zea.backend.tensorflow.layers.utils) TFDatasetToKeras (class in zea.backend.tensorflow.dataloader) theta_range (zea.scan.Scan property) Threshold (class in zea.ops) time_to_next_transmit (zea.scan.Scan property) timed_call() (zea.ops.Pipeline method) TinyAutoencoder (class in zea.models.taesd) TinyBase (class in zea.models.taesd) TinyDecoder (class in zea.models.taesd) TinyEncoder (class in zea.models.taesd) to_8bit() (in module zea.display)

to_config() (zea.ops.Pipeline method) to_dtype (zea.interface.Interface property) to_float32() (zea.ops.Normalize static method) to_iterator() (zea.data.file.File method) to_json() (zea.config.Config method) (zea.ops.Pipeline method) to_tensor() (zea.config.Config method) (zea.probes.Probe method) to_yaml() (zea.ops.Pipeline method) tof_correction() (in module zea.beamform.beamformer) TOFCorrection (class in zea.ops) total_frames (zea.data.datasets.Dataset property) train_step() (zea.models.diffusion.DiffusionModel method) transform_sc_image_to_polar() (in module zea.data.convert.camus) translate() (in module zea.utils) (zea.data.convert.echonet.H5Processor method) Transpose (class in zea.ops) tx_apodizations (zea.scan.Scan property)

U

UNet (class in zea.models.unet) UNetTimeConditional (class in zea.models.unet) UnfoldingModel() (in module zea.backend.tensorflow.models.lista) unfreeze() (zea.config.Config method) UniformRandomLines (class in zea.agent.selection) unit (zea.data.data_format.DatasetElement attribute) unjit() (zea.ops.PatchedGrid method) (zea.ops.Pipeline method) unjitable_ops (zea.ops.Pipeline property) UnknownHostnameWarning

UnknownLocalRemoteWarning UnknownUsernameWarning UpBlock() (in module zea.models.layers) update() (zea.config.Config method) update_dictionary() (in module zea.utils) update_imshow_with_mask() (in module zea.tools.selection_tool) update_recursive() (zea.config.Config method) update_state() (zea.models.utils.LossTrackerWrapper method) upload_folder_to_hf() (in module zea.tools.hf) UpMix (class in zea.ops) upmix() (in module zea.ops)

V

valid_keys (zea.ops.Operation property) (zea.ops.PatchedGrid property) (zea.ops.Pipeline property) VALID_PARAMS (zea.scan.Scan attribute) validate() (zea.data.file.File method) (zea.ops.Pipeline method) validate_file() (in module zea.data.file)

validate_folder() (zea.data.datasets.Folder method) validate_input_data() (in module zea.data.data_format) values() (zea.config.Config method) Verasonics_l11_4v (class in zea.probes) Verasonics_l11_5v (class in zea.probes) visualize_matrix() (in module zea.visualize) visualize_scan_cone() (in module zea.tools.fit_scan_cone)

W

warning() (in module zea.log) wavelength (zea.scan.Scan property) white() (in module zea.log) with_batch_dim (zea.ops.LeeFilter property) (zea.ops.PatchedGrid property) (zea.ops.Pipeline property)

wopt_mae() (in module zea.metrics) wopt_mse() (in module zea.metrics)

X

xlims (zea.scan.Scan property)

Y

yellow() (in module zea.log)

Z

zea module zea.agent module zea.agent.gumbel module zea.agent.masks module zea.agent.selection module zea.backend module zea.backend.autograd module zea.backend.jax module zea.backend.tensorflow module zea.backend.tensorflow.dataloader module zea.backend.tensorflow.layers module zea.backend.tensorflow.layers.apodization module zea.backend.tensorflow.layers.utils module zea.backend.tensorflow.losses module zea.backend.tensorflow.models module zea.backend.tensorflow.models.lista module zea.backend.tensorflow.utils module zea.backend.tensorflow.utils.callbacks module zea.backend.tensorflow.utils.utils module zea.backend.torch module zea.backend.torch.losses module zea.beamform module zea.beamform.beamformer module zea.beamform.delays module zea.beamform.lens_correction module zea.beamform.pfield module zea.beamform.phantoms module zea.beamform.pixelgrid module zea.config module zea.data module zea.data.augmentations module zea.data.convert module zea.data.convert.camus module zea.data.convert.echonet module zea.data.convert.images module zea.data.convert.matlab module zea.data.convert.picmus module zea.data.data_format module zea.data.dataloader module zea.data.datasets module

zea.data.file module zea.data.layers module zea.data.preset_utils module zea.data.utils module zea.datapaths module zea.display module zea.doppler module zea.interface module zea.io_lib module zea.log module zea.metrics module zea.models module zea.models.base module zea.models.carotid_segmenter module zea.models.dense module zea.models.diffusion module zea.models.echonet module zea.models.generative module zea.models.gmm module zea.models.layers module zea.models.lpips module zea.models.preset_utils module zea.models.presets module zea.models.taesd module zea.models.unet module zea.models.utils module zea.ops module zea.probes module zea.scan module zea.simulator module zea.tensor_ops module zea.tools module zea.tools.fit_scan_cone module zea.tools.hf module zea.tools.selection_tool module zea.tools.wndb module zea.utils module zea.visualize module zea_from_matlab_raw() (in module zea.data.convert.matlab) ZeaJSONEncoder (class in zea.data.utils) zlims (zea.scan.Scan property)